Standard Model Bio

Overview

Standard Model Bio is currently the supported foundation model in Reverie. It is designed for EHR data and expects MEDS-format events.

Required Data Format

Column	Type	Description
`subject_id`	string/int	Patient identifier
`time`	datetime	Event timestamp
`code`	string	Clinical code (ICD-10, RxNorm, LOINC, etc.)

Example:

subject_id,time,code
patient_001,2023-01-15,ICD10:E11.9
patient_001,2023-01-15,RxNorm:860975
patient_002,2023-03-10,ICD10:I10

Labels

Provide one row per patient:

subject_id,label
patient_001,0
patient_002,1

Run With This Model

Use Web UI:

reverie ui

Use CLI:

reverie train \
    --model standard-model \
    --data ./data/synthetic_data.parquet \
    --labels ./data/synthetic_labels.csv \
    --label-column label \
    --output ./results

More foundation models will be added in future releases.

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Foundation Models

Standard Model Bio

Overview

Required Data Format

Labels

Run With This Model

​Overview

​Required Data Format

​Labels

​Run With This Model

Overview

Required Data Format

Labels

Run With This Model